Data
Dataset records, tissue sources, cell numbers, platforms, publications, and download links.
Maize single-cell resource
scMaize Single-cell atlas and foundation model
A curated maize single-cell resource for atlas visualization, gene expression query, model access, and data download.
scMaizeAtlasIntegrated UMAP
Search gene / cell type
GeneZm00001d027230
Cell typeTissueGene expression
20+Projects
385,675Cells
66Samples
7Tissues
3Platforms
Resources
Database modules
Atlas
Integrated UMAP, tissue distribution, cell type annotation, and marker gene expression.
Model
scMaize model versions, input format, embedding output, applications, and weights.
Apps
Cell type annotation, cell embedding generation, and gene expression prediction.
Download
Expression matrices, metadata, integrated embeddings, model weights, and example files.
Help
Quick start, atlas guide, model guide, citation, FAQ, and contact information.
Data Resources
Integrated maize single-cell and single-nucleus transcriptomic datasets.
20+Projects
385,675Cells
66Samples
7Tissues
3Platforms
Tissue coverage
Dataset summary
SourcePublic datasets
Data typesc/snRNA-seq
OutputMatrix / Metadata / Embedding
| Project | Tissue | Samples | Platform | Publication | Resource |
|---|---|---|---|---|---|
| Loading... | |||||
scMaizeAtlas
Interactive maize single-cell atlas with tissue, cell type, and gene expression layers.
VisualizationIntegrated UMAP
Zm00001d027230
LayerCell type
Cell typeTissueDataset
UMAP
Integrated cell atlas visualization.
Tissue
Seven tissue annotation layers.
Cell type
Hierarchical cell type annotation.
Gene query
Marker and expression pattern search.
scMaize Model
Foundation models for maize single-cell representation and prediction.
scMaize-Exp
Expression-based model for cell embedding and annotation.
Input: expression matrixOutput: cell embeddingDimension: 384Weights: available
scMaize-GO
GO-enhanced model for expression prediction and functional analysis.
Cell type annotationSimilarity searchExpression predictionModel download
0.82Pearson r
0.79Spearman ρ
0.71ARI
0.76NMI
Online Apps
Web tools for query datasets and scMaize model applications.
Cell type annotation
Predict cell type labels for uploaded expression matrices.
Cell embedding
Generate low-dimensional cell representations.
Expression prediction
Predict masked or missing gene expression values.
Upload expression matrixCSV / h5ad / mtx
Download
Data files, model weights, embeddings, and example datasets.
Loading resources Reading the database file index
Help
Guide, citation, and contact information.
Quick start
Open Atlas for visualization or Download for resource files.
Gene query
Use gene ID to view expression distribution in scMaizeAtlas.
Model input
Input files should contain gene expression matrix and cell metadata.
Citation
Please cite scMaize when using atlas data, embeddings, or model weights.
Contact
Email, GitHub repository, documentation, and release notes.